Api roll 6: 2014-11-17

discovery/googleapis_beta/genomics__v1beta2.json

 {
     "auth": {
         "oauth2": {
             "scopes": {
                 "https://www.googleapis.com/auth/bigquery": {
                     "description": "View and manage your data in Google BigQuery"
                 },
                 "https://www.googleapis.com/auth/devstorage.read_write": {
                     "description": "Manage your data in Google Cloud Storage"
                 },
                 "https://www.googleapis.com/auth/genomics": {
                     "description": "View and manage Genomics data"
                 },
                 "https://www.googleapis.com/auth/genomics.readonly": {
                     "description": "View Genomics data"
                 }
             }
         }
     },
     "basePath": "/genomics/v1beta2/",
     "baseUrl": "https://www.googleapis.com/genomics/v1beta2/",
     "batchPath": "batch",
     "description": "Provides access to Genomics data.",
     "discoveryVersion": "v1",
     "documentationLink": "https://developers.google.com/genomics/v1beta2/reference",
-    "etag": "\"l66ggWbucbkBw9Lpos72oziyefE/EKP2HqTiCFaMtGY4TKqgoDAIFBQ\"",
+    "etag": "\"l66ggWbucbkBw9Lpos72oziyefE/6ckREvRjfWsdC7sKQKylGfPy3tY\"",
     "icons": {
         "x16": "http://www.google.com/images/icons/product/search-16.gif",
         "x32": "http://www.google.com/images/icons/product/search-32.gif"
     },
     "id": "genomics:v1beta2",
     "kind": "discovery#restDescription",
     "name": "genomics",
     "ownerDomain": "google.com",
     "ownerName": "Google",
     "parameters": {
@@ skipping 1127 matching lines @@
                     "response": {
                         "$ref": "VariantSet"
                     },
                     "scopes": [
                         "https://www.googleapis.com/auth/genomics"
                     ]
                 }
             }
         }
     },
-    "revision": "20141028",
+    "revision": "20141112",
     "rootUrl": "https://www.googleapis.com/",
     "schemas": {
         "AlignReadGroupSetsRequest": {
             "description": "The read group set align request.",
             "id": "AlignReadGroupSetsRequest",
             "properties": {
                 "bamSourceUris": {
                     "description": "The BAM source files for alignment. Exactly one of readGroupSetIds, bamSourceUris, interleavedFastqSource or pairedFastqSource must be provided. The caller must have READ permissions for these files.",
                     "items": {
                         "type": "string"
@@ skipping 47 matching lines @@
                 },
                 "genotype": {
                     "description": "The genotype of this variant call. Each value represents either the value of the referenceBases field or a 1-based index into alternateBases. If a variant had a referenceBases value of T and an alternateBases value of [\"A\", \"C\"], and the genotype was [2, 1], that would mean the call represented the heterozygous value CA for this variant. If the genotype was instead [0, 1], the represented value would be TA. Ordering of the genotype values is important if the phaseset is present. If a genotype is not called (that is, a . is present in the GT string) -1 is returned.",
                     "items": {
                         "format": "int32",
                         "type": "integer"
                     },
                     "type": "array"
                 },
                 "genotypeLikelihood": {
-                    "description": "The genotype likelihoods for this variant call. Each array entry represents how likely a specific genotype is for this call. The value ordering is defined by the GL tag in the VCF spec.",
+                    "description": "The genotype likelihoods for this variant call. Each array entry represents how likely a specific genotype is for this call. The value ordering is defined by the GL tag in the VCF spec. If Phred-scaled genotype likelihood scores (PL) are available and log10(P) genotype likelihood scores (GL) are not, PL scores are converted to GL scores. If both are available, PL scores are stored in info.",
                     "items": {
                         "format": "double",
                         "type": "number"
                     },
                     "type": "array"
                 },
                 "info": {
                     "additionalProperties": {
                         "description": "A string which maps to an array of values.",
                         "items": {
@@ skipping 813 matching lines @@
                 "nextMatePosition": {
                     "$ref": "Position",
                     "description": "The mapping of the primary alignment of the (readNumber+1)%numberReads read in the fragment. It replaces mate position and mate strand in SAM."
                 },
                 "numberReads": {
                     "description": "The number of reads in the fragment (extension to SAM flag 0x1).",
                     "format": "int32",
                     "type": "integer"
                 },
                 "properPlacement": {
-                    "description": "The orientation and the distance between reads from the fragment are consistent with the sequencing protocol (extension to SAM flag 0x2)",
+                    "description": "The orientation and the distance between reads from the fragment are consistent with the sequencing protocol (SAM flag 0x2)",
                     "type": "boolean"
                 },
                 "readGroupId": {
                     "description": "The ID of the read group this read belongs to. (Every read must belong to exactly one read group.)",
                     "type": "string"
                 },
                 "readGroupSetId": {
                     "description": "The ID of the read group set this read belongs to. (Every read must belong to exactly one read group set.)",
                     "type": "string"
                 },
@@ skipping 799 matching lines @@
                     "type": "array"
                 }
             },
             "type": "object"
         }
     },
     "servicePath": "genomics/v1beta2/",
     "title": "Genomics API",
     "version": "v1beta2"
 }