Enable permission warnings from ManifestHandlers.

chrome/common/extensions/permissions/permissions_data.cc

Index: chrome/common/extensions/permissions/permissions_data.cc
diff --git a/chrome/common/extensions/permissions/permissions_data.cc b/chrome/common/extensions/permissions/permissions_data.cc
index 9c0891a6b3ed97ccba97a896d2c8c8a37d8a1c7d..48687ffc837ba56af698b73982c0a3e8d6eefe6a 100644
--- a/chrome/common/extensions/permissions/permissions_data.cc
+++ b/chrome/common/extensions/permissions/permissions_data.cc
@@ -246,6 +246,7 @@ bool IsTrustedId(const std::string& extension_id) {
 
 struct PermissionsData::InitialPermissions {
   APIPermissionSet api_permissions;
+  ManifestPermissionSet manifest_permissions;
   URLPatternSet host_permissions;
   URLPatternSet scriptable_hosts;
 };
@@ -607,16 +608,19 @@ bool PermissionsData::ParsePermissions(Extension* extension, string16* error) {
 void PermissionsData::FinalizePermissions(Extension* extension) {
   active_permissions_ = new PermissionSet(
       initial_required_permissions_->api_permissions,
+      initial_required_permissions_->manifest_permissions,
       initial_required_permissions_->host_permissions,
       initial_required_permissions_->scriptable_hosts);
 
   required_permission_set_ = new PermissionSet(
       initial_required_permissions_->api_permissions,
+      initial_required_permissions_->manifest_permissions,
       initial_required_permissions_->host_permissions,
       initial_required_permissions_->scriptable_hosts);
 
   optional_permission_set_ = new PermissionSet(
       initial_optional_permissions_->api_permissions,
+      initial_optional_permissions_->manifest_permissions,
       initial_optional_permissions_->host_permissions,
       URLPatternSet());