Remove deprecated permissions functions from Extension

chrome/browser/ui/webui/extensions/extension_settings_handler.cc

 // Copyright (c) 2012 The Chromium Authors. All rights reserved.
 // Use of this source code is governed by a BSD-style license that can be
 // found in the LICENSE file.
 
 #include "chrome/browser/ui/webui/extensions/extension_settings_handler.h"
 
 #include "apps/app_load_service.h"
 #include "apps/app_restore_service.h"
 #include "apps/app_window.h"
 #include "apps/app_window_registry.h"
@@ skipping 1048 matching lines @@
           ->GetExtensionById(extension_id, ExtensionRegistry::EVERYTHING);
   if (!extension)
     return;
 
   if (!extension_id_prompting_.empty())
     return;  // Only one prompt at a time.
 
   extension_id_prompting_ = extension->id();
   prompt_.reset(new ExtensionInstallPrompt(web_contents()));
   std::vector<base::FilePath> retained_file_paths;
-  if (extension->HasAPIPermission(APIPermission::kFileSystem)) {
+  if (extension->permissions_data()->HasAPIPermission(
+          APIPermission::kFileSystem)) {
     std::vector<apps::SavedFileEntry> retained_file_entries =
         apps::SavedFilesService::Get(Profile::FromWebUI(
             web_ui()))->GetAllFileEntries(extension_id_prompting_);
     for (size_t i = 0; i < retained_file_entries.size(); ++i) {
       retained_file_paths.push_back(retained_file_entries[i].path);
     }
   }
   // The BrokerDelegate manages its own lifetime.
   prompt_->ReviewPermissions(
       new BrokerDelegate(AsWeakPtr()), extension, retained_file_paths);
@@ skipping 240 matching lines @@
     extension_service_->EnableExtension(extension_id);
   } else {
     ExtensionErrorReporter::GetInstance()->ReportError(
         base::UTF8ToUTF16(JoinString(requirement_errors, ' ')),
         true);  // Be noisy.
   }
   requirements_checker_.reset();
 }
 
 }  // namespace extensions