Api-roll 48: 2017-04-18

generated/googleapis/lib/genomics/v1.dart

 // This is a generated file (see the discoveryapis_generator project).
 
 library googleapis.genomics.v1;
 
 import 'dart:core' as core;
 import 'dart:async' as async;
 import 'dart:convert' as convert;
 
 import 'package:_discoveryapis_commons/_discoveryapis_commons.dart' as commons;
 import 'package:http/http.dart' as http;
@@ skipping 1392 matching lines @@
   }
 
   /**
    * Lists operations that match the specified filter in the request.
    *
    * Request parameters:
    *
    * [name] - The name of the operation collection.
    * Value must have pattern "^operations$".
    *
+   * [pageToken] - The standard list page token.
+   *
+   * [pageSize] - The maximum number of results to return. If unspecified,
+   * defaults to
+   * 256. The maximum value is 2048.
+   *
    * [filter] - A string for filtering Operations.
    * The following filter fields are supported:
    *
    * * projectId: Required. Corresponds to
    *   OperationMetadata.projectId.
    * * createTime: The time this job was created, in seconds from the
    * [epoch](http://en.wikipedia.org/wiki/Unix_time). Can use `>=` and/or `<=`
    *   operators.
    * * status&#58; Can be `RUNNING`, `SUCCESS`, `FAILURE`, or `CANCELED`. Only
    *   one status may be specified.
    * * labels.key where key is a label key.
    *
    * Examples&#58;
    *
    * * `projectId = my-project AND createTime >= 1432140000`
    * * `projectId = my-project AND createTime >= 1432140000 AND createTime <=
    * 1432150000 AND status = RUNNING`
    * * `projectId = my-project AND labels.color = *`
    * * `projectId = my-project AND labels.color = red`
    *
-   * [pageToken] - The standard list page token.
-   *
-   * [pageSize] - The maximum number of results to return. If unspecified,
-   * defaults to
-   * 256. The maximum value is 2048.
-   *
    * Completes with a [ListOperationsResponse].
    *
    * Completes with a [commons.ApiRequestError] if the API endpoint returned an
    * error.
    *
    * If the used [http.Client] completes with an error when making a REST call,
    * this method will complete with the same error.
    */
-  async.Future<ListOperationsResponse> list(core.String name, {core.String filter, core.String pageToken, core.int pageSize}) {
+  async.Future<ListOperationsResponse> list(core.String name, {core.String pageToken, core.int pageSize, core.String filter}) {
     var _url = null;
     var _queryParams = new core.Map();
     var _uploadMedia = null;
     var _uploadOptions = null;
     var _downloadOptions = commons.DownloadOptions.Metadata;
     var _body = null;
 
     if (name == null) {
       throw new core.ArgumentError("Parameter name is required.");
     }
-    if (filter != null) {
-      _queryParams["filter"] = [filter];
-    }
     if (pageToken != null) {
       _queryParams["pageToken"] = [pageToken];
     }
     if (pageSize != null) {
       _queryParams["pageSize"] = ["${pageSize}"];
     }
+    if (filter != null) {
+      _queryParams["filter"] = [filter];
+    }
 
     _url = 'v1/' + commons.Escaper.ecapeVariableReserved('$name');
 
     var _response = _requester.request(_url,
                                        "GET",
                                        body: _body,
                                        queryParams: _queryParams,
                                        uploadOptions: _uploadOptions,
                                        uploadMedia: _uploadMedia,
                                        downloadOptions: _downloadOptions);
@@ skipping 342 matching lines @@
    * base in the reference sequence. Coverage buckets are available at several
    * precomputed bucket widths, enabling retrieval of various coverage 'zoom
    * levels'. The caller must have READ permissions for the target read group
    * set.
    *
    * Request parameters:
    *
    * [readGroupSetId] - Required. The ID of the read group set over which
    * coverage is requested.
    *
-   * [referenceName] - The name of the reference to query, within the reference
-   * set associated
-   * with this query. Optional.
-   *
-   * [end] - The end position of the range on the reference, 0-based exclusive.
-   * If
-   * specified, `referenceName` must also be specified. If unset or 0, defaults
-   * to the length of the reference.
-   *
    * [pageToken] - The continuation token, which is used to page through large
    * result sets.
    * To get the next page of results, set this parameter to the value of
    * `nextPageToken` from the previous response.
    *
    * [pageSize] - The maximum number of results to return in a single page. If
    * unspecified,
    * defaults to 1024. The maximum value is 2048.
    *
    * [start] - The start position of the range on the reference, 0-based
    * inclusive. If
    * specified, `referenceName` must also be specified. Defaults to 0.
    *
    * [targetBucketWidth] - The desired width of each reported coverage bucket in
    * base pairs. This
    * will be rounded down to the nearest precomputed bucket width; the value
    * of which is returned as `bucketWidth` in the response. Defaults
    * to infinity (each bucket spans an entire reference sequence) or the length
    * of the target range, if specified. The smallest precomputed
    * `bucketWidth` is currently 2048 base pairs; this is subject to
    * change.
    *
+   * [referenceName] - The name of the reference to query, within the reference
+   * set associated
+   * with this query. Optional.
+   *
+   * [end] - The end position of the range on the reference, 0-based exclusive.
+   * If
+   * specified, `referenceName` must also be specified. If unset or 0, defaults
+   * to the length of the reference.
+   *
    * Completes with a [ListCoverageBucketsResponse].
    *
    * Completes with a [commons.ApiRequestError] if the API endpoint returned an
    * error.
    *
    * If the used [http.Client] completes with an error when making a REST call,
    * this method will complete with the same error.
    */
-  async.Future<ListCoverageBucketsResponse> list(core.String readGroupSetId, {core.String referenceName, core.String end, core.String pageToken, core.int pageSize, core.String start, core.String targetBucketWidth}) {
+  async.Future<ListCoverageBucketsResponse> list(core.String readGroupSetId, {core.String pageToken, core.int pageSize, core.String start, core.String targetBucketWidth, core.String referenceName, core.String end}) {
     var _url = null;
     var _queryParams = new core.Map();
     var _uploadMedia = null;
     var _uploadOptions = null;
     var _downloadOptions = commons.DownloadOptions.Metadata;
     var _body = null;
 
     if (readGroupSetId == null) {
       throw new core.ArgumentError("Parameter readGroupSetId is required.");
     }
-    if (referenceName != null) {
-      _queryParams["referenceName"] = [referenceName];
-    }
-    if (end != null) {
-      _queryParams["end"] = [end];
-    }
     if (pageToken != null) {
       _queryParams["pageToken"] = [pageToken];
     }
     if (pageSize != null) {
       _queryParams["pageSize"] = ["${pageSize}"];
     }
     if (start != null) {
       _queryParams["start"] = [start];
     }
     if (targetBucketWidth != null) {
       _queryParams["targetBucketWidth"] = [targetBucketWidth];
     }
+    if (referenceName != null) {
+      _queryParams["referenceName"] = [referenceName];
+    }
+    if (end != null) {
+      _queryParams["end"] = [end];
+    }
 
     _url = 'v1/readgroupsets/' + commons.Escaper.ecapeVariable('$readGroupSetId') + '/coveragebuckets';
 
     var _response = _requester.request(_url,
                                        "GET",
                                        body: _body,
                                        queryParams: _queryParams,
                                        uploadOptions: _uploadOptions,
                                        uploadMedia: _uploadMedia,
                                        downloadOptions: _downloadOptions);
@@ skipping 190 matching lines @@
    * [Fundamentals of Google
    * Genomics](https://cloud.google.com/genomics/fundamentals-of-google-genomics)
    *
    * Implements
    * [GlobalAllianceApi.getReferenceBases](https://github.com/ga4gh/schemas/blob/v0.5.1/src/main/resources/avro/referencemethods.avdl#L221).
    *
    * Request parameters:
    *
    * [referenceId] - The ID of the reference.
    *
-   * [start] - The start position (0-based) of this query. Defaults to 0.
-   *
-   * [end] - The end position (0-based, exclusive) of this query. Defaults to
-   * the length
-   * of this reference.
-   *
    * [pageToken] - The continuation token, which is used to page through large
    * result sets.
    * To get the next page of results, set this parameter to the value of
    * `nextPageToken` from the previous response.
    *
    * [pageSize] - The maximum number of bases to return in a single page. If
    * unspecified,
    * defaults to 200Kbp (kilo base pairs). The maximum value is 10Mbp (mega base
    * pairs).
    *
+   * [start] - The start position (0-based) of this query. Defaults to 0.
+   *
+   * [end] - The end position (0-based, exclusive) of this query. Defaults to
+   * the length
+   * of this reference.
+   *
    * Completes with a [ListBasesResponse].
    *
    * Completes with a [commons.ApiRequestError] if the API endpoint returned an
    * error.
    *
    * If the used [http.Client] completes with an error when making a REST call,
    * this method will complete with the same error.
    */
-  async.Future<ListBasesResponse> list(core.String referenceId, {core.String start, core.String end, core.String pageToken, core.int pageSize}) {
+  async.Future<ListBasesResponse> list(core.String referenceId, {core.String pageToken, core.int pageSize, core.String start, core.String end}) {
     var _url = null;
     var _queryParams = new core.Map();
     var _uploadMedia = null;
     var _uploadOptions = null;
     var _downloadOptions = commons.DownloadOptions.Metadata;
     var _body = null;
 
     if (referenceId == null) {
       throw new core.ArgumentError("Parameter referenceId is required.");
     }
+    if (pageToken != null) {
+      _queryParams["pageToken"] = [pageToken];
+    }
+    if (pageSize != null) {
+      _queryParams["pageSize"] = ["${pageSize}"];
+    }
     if (start != null) {
       _queryParams["start"] = [start];
     }
     if (end != null) {
       _queryParams["end"] = [end];
     }
-    if (pageToken != null) {
-      _queryParams["pageToken"] = [pageToken];
-    }
-    if (pageSize != null) {
-      _queryParams["pageSize"] = ["${pageSize}"];
-    }
 
     _url = 'v1/references/' + commons.Escaper.ecapeVariable('$referenceId') + '/bases';
 
     var _response = _requester.request(_url,
                                        "GET",
                                        body: _body,
                                        queryParams: _queryParams,
                                        uploadOptions: _uploadOptions,
                                        uploadMedia: _uploadMedia,
                                        downloadOptions: _downloadOptions);
@@ skipping 2067 matching lines @@
 
 /** The variant data import request. */
 class ImportVariantsRequest {
   /**
    * The format of the variant data being imported. If unspecified, defaults to
    * to `VCF`.
    * Possible string values are:
    * - "FORMAT_UNSPECIFIED"
    * - "FORMAT_VCF" : VCF (Variant Call Format). The VCF files may be gzip
    * compressed. gVCF is
-   * also supported.
+   * also supported. Disclaimer: gzip VCF imports are currently much slower
+   * than equivalent uncompressed VCF imports. For this reason, uncompressed
+   * VCF is currently recommended for imports with more than 1GB combined
+   * uncompressed size, or for time sensitive imports.
    * - "FORMAT_COMPLETE_GENOMICS" : Complete Genomics masterVarBeta format. The
    * masterVarBeta files may
    * be bzip2 compressed.
    */
   core.String format;
   /**
    * A mapping between info field keys and the InfoMergeOperations to
    * be performed on them. This is plumbed down to the MergeVariantRequests
    * generated by the resulting import job.
    */
@@ skipping 3431 matching lines @@
     }
     if (type != null) {
       _json["type"] = type;
     }
     if (value != null) {
       _json["value"] = value;
     }
     return _json;
   }
 }