addFile() must refresh the file.

pkg/analyzer/lib/src/dart/analysis/driver.dart

 // Copyright (c) 2016, the Dart project authors.  Please see the AUTHORS file
 // for details. All rights reserved. Use of this source code is governed by a
 // BSD-style license that can be found in the LICENSE file.
 
 import 'dart:async';
 import 'dart:collection';
 import 'dart:typed_data';
 
 import 'package:analyzer/dart/ast/ast.dart';
 import 'package:analyzer/dart/element/element.dart' show CompilationUnitElement;
@@ skipping 366 matching lines @@
   /**
    * Add the file with the given [path] to the set of files to analyze.
    *
    * The [path] must be absolute and normalized.
    *
    * The results of analysis are eventually produced by the [results] stream.
    */
   void addFile(String path) {
     if (AnalysisEngine.isDartFileName(path)) {
       _explicitFiles.add(path);
+      _changedFiles.add(path);
       _filesToAnalyze.add(path);
     }
     _statusSupport.transitionToAnalyzing();
     _scheduler._notify(this);
   }
 
   /**
    * The file with the given [path] might have changed - updated, added or
    * removed. Or not, we don't know. Or it might have, but then changed back.
    *
@@ skipping 1126 matching lines @@
           libraryDeclarations.add(new TopLevelDeclarationInSource(
               file.source, declaration, isExported));
         }
       }
     }
 
     // We're not done yet.
     return false;
   }
 }