Pass in the prototype to CreateApiFunction rather than setting it on the result.

src/bootstrapper.cc

Index: src/bootstrapper.cc
diff --git a/src/bootstrapper.cc b/src/bootstrapper.cc
index 308564d07270007b44e221dc58bffe5d73b8f997..67ef5e37b6783778e484c3d3b97cc389e46b35cf 100644
--- a/src/bootstrapper.cc
+++ b/src/bootstrapper.cc
@@ -721,6 +721,7 @@ Handle<JSGlobalProxy> Genesis::CreateNewGlobals(
         FunctionTemplateInfo::cast(js_global_template->constructor()));
     js_global_function =
         factory()->CreateApiFunction(js_global_constructor,
+                                     factory()->the_hole_value(),
                                      factory()->InnerGlobalObject);
   }
 
@@ -748,6 +749,7 @@ Handle<JSGlobalProxy> Genesis::CreateNewGlobals(
             FunctionTemplateInfo::cast(data->constructor()));
     global_proxy_function =
         factory()->CreateApiFunction(global_constructor,
+                                     factory()->the_hole_value(),
                                      factory()->OuterGlobalObject);
   }