Make "--no-packages-dir" the default.

test/get/git/check_out_transitive_test.dart

 // Copyright (c) 2012, the Dart project authors.  Please see the AUTHORS file
 // for details. All rights reserved. Use of this source code is governed by a
 // BSD-style license that can be found in the LICENSE file.
 
 import '../../descriptor.dart' as d;
 import '../../test_pub.dart';
 
 main() {
   integration('checks out packages transitively from Git', () {
     ensureGit();
 
     d.git('foo.git', [
       d.libDir('foo'),
       d.libPubspec('foo', '1.0.0', deps: {
         "bar": {"git": "../bar.git"}
       })
     ]).create();
 
     d.git('bar.git', [
       d.libDir('bar'),
       d.libPubspec('bar', '1.0.0')
     ]).create();
 
     d.appDir({"foo": {"git": "../foo.git"}}).create();
 
-    pubGet();
+    // TODO(rnystrom): Remove "--packages-dir" and validate using the
+    // ".packages" file instead of looking in the "packages" directory.
+    pubGet(args: ["--packages-dir"]);
 
     d.dir(cachePath, [
       d.dir('git', [
         d.dir('cache', [
           d.gitPackageRepoCacheDir('foo'),
           d.gitPackageRepoCacheDir('bar')
         ]),
         d.gitPackageRevisionCacheDir('foo'),
         d.gitPackageRevisionCacheDir('bar')
       ])
     ]).validate();
 
     d.dir(packagesPath, [
       d.dir('foo', [
         d.file('foo.dart', 'main() => "foo";')
       ]),
       d.dir('bar', [
         d.file('bar.dart', 'main() => "bar";')
       ])
     ]).validate();
   });
 }