Remove several references to JavaFile

pkg/analyzer/test/generated/all_the_rest_test.dart

Index: pkg/analyzer/test/generated/all_the_rest_test.dart
diff --git a/pkg/analyzer/test/generated/all_the_rest_test.dart b/pkg/analyzer/test/generated/all_the_rest_test.dart
index 60e00e0c8d39e251e693f1d1daa94d65ff7b1d89..9a5094396ac9be99803bdcc2e3f32062288edb5b 100644
--- a/pkg/analyzer/test/generated/all_the_rest_test.dart
+++ b/pkg/analyzer/test/generated/all_the_rest_test.dart
@@ -45,10 +45,12 @@ import 'test_support.dart';
 main() {
   initializeTestEnvironment();
   defineReflectiveTests(ContentCacheTest);
+  // ignore: deprecated_member_use
   defineReflectiveTests(CustomUriResolverTest);
   defineReflectiveTests(DartUriResolverTest);
   // ignore: deprecated_member_use
   defineReflectiveTests(DirectoryBasedDartSdkTest);
+  // ignore: deprecated_member_use
   defineReflectiveTests(DirectoryBasedSourceContainerTest);
   defineReflectiveTests(ElementBuilderTest);
   defineReflectiveTests(ElementLocatorTest);
@@ -332,6 +334,7 @@ class DirectoryBasedDartSdkTest {
   }
 }
 
+@deprecated
 @reflectiveTest
 class DirectoryBasedSourceContainerTest {
   void test_contains() {