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| 1 { | 1 { |
| 2 "auth": { | 2 "auth": { |
| 3 "oauth2": { | 3 "oauth2": { |
| 4 "scopes": { | 4 "scopes": { |
| 5 "https://www.googleapis.com/auth/bigquery": { | 5 "https://www.googleapis.com/auth/bigquery": { |
| 6 "description": "View and manage your data in Google BigQuery
" | 6 "description": "View and manage your data in Google BigQuery
" |
| 7 }, | 7 }, |
| 8 "https://www.googleapis.com/auth/cloud-platform": { | 8 "https://www.googleapis.com/auth/cloud-platform": { |
| 9 "description": "View and manage your data across Google Clou
d Platform services" | 9 "description": "View and manage your data across Google Clou
d Platform services" |
| 10 }, | 10 }, |
| 11 "https://www.googleapis.com/auth/devstorage.read_write": { | 11 "https://www.googleapis.com/auth/devstorage.read_write": { |
| 12 "description": "Manage your data in Google Cloud Storage" | 12 "description": "Manage your data in Google Cloud Storage" |
| 13 }, | 13 }, |
| 14 "https://www.googleapis.com/auth/genomics": { | 14 "https://www.googleapis.com/auth/genomics": { |
| 15 "description": "View and manage Genomics data" | 15 "description": "View and manage Genomics data" |
| 16 }, | 16 }, |
| 17 "https://www.googleapis.com/auth/genomics.readonly": { | 17 "https://www.googleapis.com/auth/genomics.readonly": { |
| 18 "description": "View Genomics data" | 18 "description": "View Genomics data" |
| 19 } | 19 } |
| 20 } | 20 } |
| 21 } | 21 } |
| 22 }, | 22 }, |
| 23 "basePath": "/genomics/v1beta2/", | 23 "basePath": "/genomics/v1beta2/", |
| 24 "baseUrl": "https://www.googleapis.com/genomics/v1beta2/", | 24 "baseUrl": "https://www.googleapis.com/genomics/v1beta2/", |
| 25 "batchPath": "batch", | 25 "batchPath": "batch", |
| 26 "description": "Provides access to Genomics data.", | 26 "description": "Provides access to Genomics data.", |
| 27 "discoveryVersion": "v1", | 27 "discoveryVersion": "v1", |
| 28 "documentationLink": "https://developers.google.com/genomics/v1beta2/referen
ce", | 28 "documentationLink": "https://developers.google.com/genomics/v1beta2/referen
ce", |
| 29 "etag": "\"bRFOOrZKfO9LweMbPqu0kcu6De8/l-JZ2zxsTgnudDIWYa_zcN3dEbw\"", | 29 "etag": "\"bRFOOrZKfO9LweMbPqu0kcu6De8/K0urKFIju1s7Sdw5a9XX-KoLHWg\"", |
| 30 "icons": { | 30 "icons": { |
| 31 "x16": "http://www.google.com/images/icons/product/search-16.gif", | 31 "x16": "http://www.google.com/images/icons/product/search-16.gif", |
| 32 "x32": "http://www.google.com/images/icons/product/search-32.gif" | 32 "x32": "http://www.google.com/images/icons/product/search-32.gif" |
| 33 }, | 33 }, |
| 34 "id": "genomics:v1beta2", | 34 "id": "genomics:v1beta2", |
| 35 "kind": "discovery#restDescription", | 35 "kind": "discovery#restDescription", |
| 36 "name": "genomics", | 36 "name": "genomics", |
| 37 "ownerDomain": "google.com", | 37 "ownerDomain": "google.com", |
| 38 "ownerName": "Google", | 38 "ownerName": "Google", |
| 39 "parameters": { | 39 "parameters": { |
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| 1288 }, | 1288 }, |
| 1289 "response": { | 1289 "response": { |
| 1290 "$ref": "VariantSet" | 1290 "$ref": "VariantSet" |
| 1291 }, | 1291 }, |
| 1292 "scopes": [ | 1292 "scopes": [ |
| 1293 "https://www.googleapis.com/auth/cloud-platform", | 1293 "https://www.googleapis.com/auth/cloud-platform", |
| 1294 "https://www.googleapis.com/auth/genomics" | 1294 "https://www.googleapis.com/auth/genomics" |
| 1295 ] | 1295 ] |
| 1296 }, | 1296 }, |
| 1297 "delete": { | 1297 "delete": { |
| 1298 "description": "Deletes the contents of a variant set. The v
ariant set object is not deleted.", | 1298 "description": "Deletes a variant set including all variants
, call sets, and calls within. This is not reversible.", |
| 1299 "httpMethod": "DELETE", | 1299 "httpMethod": "DELETE", |
| 1300 "id": "genomics.variantsets.delete", | 1300 "id": "genomics.variantsets.delete", |
| 1301 "parameterOrder": [ | 1301 "parameterOrder": [ |
| 1302 "variantSetId" | 1302 "variantSetId" |
| 1303 ], | 1303 ], |
| 1304 "parameters": { | 1304 "parameters": { |
| 1305 "variantSetId": { | 1305 "variantSetId": { |
| 1306 "description": "The ID of the variant set to be dele
ted.", | 1306 "description": "The ID of the variant set to be dele
ted.", |
| 1307 "location": "path", | 1307 "location": "path", |
| 1308 "required": true, | 1308 "required": true, |
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| 1362 "response": { | 1362 "response": { |
| 1363 "$ref": "VariantSet" | 1363 "$ref": "VariantSet" |
| 1364 }, | 1364 }, |
| 1365 "scopes": [ | 1365 "scopes": [ |
| 1366 "https://www.googleapis.com/auth/cloud-platform", | 1366 "https://www.googleapis.com/auth/cloud-platform", |
| 1367 "https://www.googleapis.com/auth/genomics", | 1367 "https://www.googleapis.com/auth/genomics", |
| 1368 "https://www.googleapis.com/auth/genomics.readonly" | 1368 "https://www.googleapis.com/auth/genomics.readonly" |
| 1369 ] | 1369 ] |
| 1370 }, | 1370 }, |
| 1371 "importVariants": { | 1371 "importVariants": { |
| 1372 "description": "Creates variant data by asynchronously impor
ting the provided information.\n\nThe variants for import will be merged with an
y existing data and each other according to the behavior of mergeVariants. In pa
rticular, this means for merged VCF variants that have conflicting INFO fields,
some data will be arbitrarily discarded. As a special case, for single-sample VC
F files, QUAL and FILTER fields will be moved to the call level; these are somet
imes interpreted in a call-specific context. Imported VCF headers are appended t
o the metadata already in a variant set.", | 1372 "description": "Creates variant data by asynchronously impor
ting the provided information.\n\nThe variants for import will be merged with an
y existing data and each other according to the behavior of mergeVariants. In pa
rticular, this means for merged VCF variants that have conflicting info fields,
some data will be arbitrarily discarded. As a special case, for single-sample VC
F files, QUAL and FILTER fields will be moved to the call level; these are somet
imes interpreted in a call-specific context. Imported VCF headers are appended t
o the metadata already in a variant set.", |
| 1373 "httpMethod": "POST", | 1373 "httpMethod": "POST", |
| 1374 "id": "genomics.variantsets.importVariants", | 1374 "id": "genomics.variantsets.importVariants", |
| 1375 "parameterOrder": [ | 1375 "parameterOrder": [ |
| 1376 "variantSetId" | 1376 "variantSetId" |
| 1377 ], | 1377 ], |
| 1378 "parameters": { | 1378 "parameters": { |
| 1379 "variantSetId": { | 1379 "variantSetId": { |
| 1380 "description": "Required. The variant set to which v
ariant data should be imported.", | 1380 "description": "Required. The variant set to which v
ariant data should be imported.", |
| 1381 "location": "path", | 1381 "location": "path", |
| 1382 "required": true, | 1382 "required": true, |
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| 1487 "$ref": "VariantSet" | 1487 "$ref": "VariantSet" |
| 1488 }, | 1488 }, |
| 1489 "scopes": [ | 1489 "scopes": [ |
| 1490 "https://www.googleapis.com/auth/cloud-platform", | 1490 "https://www.googleapis.com/auth/cloud-platform", |
| 1491 "https://www.googleapis.com/auth/genomics" | 1491 "https://www.googleapis.com/auth/genomics" |
| 1492 ] | 1492 ] |
| 1493 } | 1493 } |
| 1494 } | 1494 } |
| 1495 } | 1495 } |
| 1496 }, | 1496 }, |
| 1497 "revision": "20160127", | 1497 "revision": "20160309", |
| 1498 "rootUrl": "https://www.googleapis.com/", | 1498 "rootUrl": "https://www.googleapis.com/", |
| 1499 "schemas": { | 1499 "schemas": { |
| 1500 "Annotation": { | 1500 "Annotation": { |
| 1501 "description": "An annotation describes a region of reference genome
. The value of an annotation may be one of several canonical types, supplemented
by arbitrary info tags. An annotation is not inherently associated with a speci
fic sample or individual (though a client could choose to use annotations in thi
s way). Example canonical annotation types are GENE and VARIANT.", | 1501 "description": "An annotation describes a region of reference genome
. The value of an annotation may be one of several canonical types, supplemented
by arbitrary info tags. An annotation is not inherently associated with a speci
fic sample or individual (though a client could choose to use annotations in thi
s way). Example canonical annotation types are GENE and VARIANT.", |
| 1502 "id": "Annotation", | 1502 "id": "Annotation", |
| 1503 "properties": { | 1503 "properties": { |
| 1504 "annotationSetId": { | 1504 "annotationSetId": { |
| 1505 "description": "The annotation set to which this annotation
belongs.", | 1505 "description": "The annotation set to which this annotation
belongs.", |
| 1506 "type": "string" | 1506 "type": "string" |
| 1507 }, | 1507 }, |
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| 2036 "type": "string" | 2036 "type": "string" |
| 2037 } | 2037 } |
| 2038 }, | 2038 }, |
| 2039 "type": "object" | 2039 "type": "object" |
| 2040 }, | 2040 }, |
| 2041 "ImportVariantsRequest": { | 2041 "ImportVariantsRequest": { |
| 2042 "description": "The variant data import request.", | 2042 "description": "The variant data import request.", |
| 2043 "id": "ImportVariantsRequest", | 2043 "id": "ImportVariantsRequest", |
| 2044 "properties": { | 2044 "properties": { |
| 2045 "format": { | 2045 "format": { |
| 2046 "description": "The format of the variant data being importe
d. If unspecified, defaults to to \"VCF\".", | 2046 "description": "The format of the variant data being importe
d. If unspecified, defaults to \"VCF\".", |
| 2047 "enum": [ | 2047 "enum": [ |
| 2048 "COMPLETE_GENOMICS", | 2048 "COMPLETE_GENOMICS", |
| 2049 "VCF" | 2049 "VCF" |
| 2050 ], | 2050 ], |
| 2051 "enumDescriptions": [ | 2051 "enumDescriptions": [ |
| 2052 "", | 2052 "", |
| 2053 "" | 2053 "" |
| 2054 ], | 2054 ], |
| 2055 "type": "string" | 2055 "type": "string" |
| 2056 }, | 2056 }, |
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| 2302 "type": "array" | 2302 "type": "array" |
| 2303 }, | 2303 }, |
| 2304 "nextPageToken": { | 2304 "nextPageToken": { |
| 2305 "description": "The continuation token, which is used to pag
e through large result sets. Provide this value in a subsequent request to retur
n the next page of results. This field will be empty if there aren't any additio
nal results.", | 2305 "description": "The continuation token, which is used to pag
e through large result sets. Provide this value in a subsequent request to retur
n the next page of results. This field will be empty if there aren't any additio
nal results.", |
| 2306 "type": "string" | 2306 "type": "string" |
| 2307 } | 2307 } |
| 2308 }, | 2308 }, |
| 2309 "type": "object" | 2309 "type": "object" |
| 2310 }, | 2310 }, |
| 2311 "MergeVariantsRequest": { | 2311 "MergeVariantsRequest": { |
| 2312 "description": "", |
| 2312 "id": "MergeVariantsRequest", | 2313 "id": "MergeVariantsRequest", |
| 2313 "properties": { | 2314 "properties": { |
| 2314 "variants": { | 2315 "variants": { |
| 2315 "description": "The variants to be merged with existing vari
ants.", | 2316 "description": "The variants to be merged with existing vari
ants.", |
| 2316 "items": { | 2317 "items": { |
| 2317 "$ref": "Variant" | 2318 "$ref": "Variant" |
| 2318 }, | 2319 }, |
| 2319 "type": "array" | 2320 "type": "array" |
| 2320 } | 2321 } |
| 2321 }, | 2322 }, |
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| 2752 "type": "string" | 2753 "type": "string" |
| 2753 } | 2754 } |
| 2754 }, | 2755 }, |
| 2755 "type": "object" | 2756 "type": "object" |
| 2756 }, | 2757 }, |
| 2757 "ReferenceBound": { | 2758 "ReferenceBound": { |
| 2758 "description": "ReferenceBound records an upper bound for the starti
ng coordinate of variants in a particular reference.", | 2759 "description": "ReferenceBound records an upper bound for the starti
ng coordinate of variants in a particular reference.", |
| 2759 "id": "ReferenceBound", | 2760 "id": "ReferenceBound", |
| 2760 "properties": { | 2761 "properties": { |
| 2761 "referenceName": { | 2762 "referenceName": { |
| 2762 "description": "The name of the reference associated with th
is ReferenceBound.", | 2763 "description": "The name of the reference associated with th
is reference bound.", |
| 2763 "type": "string" | 2764 "type": "string" |
| 2764 }, | 2765 }, |
| 2765 "upperBound": { | 2766 "upperBound": { |
| 2766 "description": "An upper bound (inclusive) on the starting c
oordinate of any variant in the reference sequence.", | 2767 "description": "An upper bound (inclusive) on the starting c
oordinate of any variant in the reference sequence.", |
| 2767 "format": "int64", | 2768 "format": "int64", |
| 2768 "type": "string" | 2769 "type": "string" |
| 2769 } | 2770 } |
| 2770 }, | 2771 }, |
| 2771 "type": "object" | 2772 "type": "object" |
| 2772 }, | 2773 }, |
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| 3304 "type": "string" | 3305 "type": "string" |
| 3305 }, | 3306 }, |
| 3306 "type": "array" | 3307 "type": "array" |
| 3307 }, | 3308 }, |
| 3308 "end": { | 3309 "end": { |
| 3309 "description": "The end of the window, 0-based exclusive. If
unspecified or 0, defaults to the length of the reference.", | 3310 "description": "The end of the window, 0-based exclusive. If
unspecified or 0, defaults to the length of the reference.", |
| 3310 "format": "int64", | 3311 "format": "int64", |
| 3311 "type": "string" | 3312 "type": "string" |
| 3312 }, | 3313 }, |
| 3313 "maxCalls": { | 3314 "maxCalls": { |
| 3314 "description": "The maximum number of calls to return in a s
ingle page. Note that this limit may be exceeded; at least one variant is always
returned per page, even if it has more calls than this limit. If unspecified, d
efaults to 5000. The maximum value is 10000.", | 3315 "description": "The maximum number of calls to return in a s
ingle page. Note that this limit may be exceeded in the event that a matching va
riant contains more calls than the requested maximum. If unspecified, defaults t
o 5000. The maximum value is 10000.", |
| 3315 "format": "int32", | 3316 "format": "int32", |
| 3316 "type": "integer" | 3317 "type": "integer" |
| 3317 }, | 3318 }, |
| 3318 "pageSize": { | 3319 "pageSize": { |
| 3319 "description": "The maximum number of variants to return in
a single page. If unspecified, defaults to 5000. The maximum value is 10000.", | 3320 "description": "The maximum number of variants to return in
a single page. If unspecified, defaults to 5000. The maximum value is 10000.", |
| 3320 "format": "int32", | 3321 "format": "int32", |
| 3321 "type": "integer" | 3322 "type": "integer" |
| 3322 }, | 3323 }, |
| 3323 "pageToken": { | 3324 "pageToken": { |
| 3324 "description": "The continuation token, which is used to pag
e through large result sets. To get the next page of results, set this parameter
to the value of nextPageToken from the previous response.", | 3325 "description": "The continuation token, which is used to pag
e through large result sets. To get the next page of results, set this parameter
to the value of nextPageToken from the previous response.", |
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| 3679 "type": "string" | 3680 "type": "string" |
| 3680 } | 3681 } |
| 3681 }, | 3682 }, |
| 3682 "type": "object" | 3683 "type": "object" |
| 3683 } | 3684 } |
| 3684 }, | 3685 }, |
| 3685 "servicePath": "genomics/v1beta2/", | 3686 "servicePath": "genomics/v1beta2/", |
| 3686 "title": "Genomics API", | 3687 "title": "Genomics API", |
| 3687 "version": "v1beta2" | 3688 "version": "v1beta2" |
| 3688 } | 3689 } |
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