Try the original CL "Always persist bookmark IDs" again with the fix to...

chrome/browser/gtk/bookmark_manager_gtk.cc

 // Copyright (c) 2009 The Chromium Authors. All rights reserved.
 // Use of this source code is governed by a BSD-style license that can be
 // found in the LICENSE file.
 
 #include "chrome/browser/gtk/bookmark_manager_gtk.h"
 
 #include <vector>
 
 #include "app/l10n_util.h"
 #include "app/resource_bundle.h"
@@ skipping 19 matching lines @@
 #include "grit/theme_resources.h"
 
 namespace {
 
 // Number of bookmarks shown in recently bookmarked.
 const int kRecentlyBookmarkedCount = 50;
 
 // IDs for the recently added and search nodes. These values assume that node
 // IDs will be strictly non-negative, which is an implementation detail of
 // BookmarkModel, so this is sort of a hack.
-const int kRecentID = -1;
-const int kSearchID = -2;
+const int64 kRecentID = -1;
+const int64 kSearchID = -2;
 
 // Padding between "Search:" and the entry field, in pixels.
 const int kSearchPadding = 5;
 
 // Time between a user action in the search box and when we perform the search.
 const int kSearchDelayMS = 200;
 
 // The default width of a column in the right tree view. Since we set the
 // columns to ellipsize, if we don't explicitly set a width they will be
 // wide enough to display only '...'. This will be overridden if the user
@@ skipping 1179 matching lines @@
   } else if (id == IDS_BOOKMARK_MANAGER_EXPORT_MENU) {
     if (g_browser_process->io_thread()) {
       bookmark_html_writer::WriteBookmarks(
           g_browser_process->io_thread()->message_loop(), model_,
           path.ToWStringHack());
     }
   } else {
     NOTREACHED();
   }
 }