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1 { | 1 { |
2 "auth": { | 2 "auth": { |
3 "oauth2": { | 3 "oauth2": { |
4 "scopes": { | 4 "scopes": { |
5 "https://www.googleapis.com/auth/bigquery": { | 5 "https://www.googleapis.com/auth/bigquery": { |
6 "description": "View and manage your data in Google BigQuery
" | 6 "description": "View and manage your data in Google BigQuery
" |
7 }, | 7 }, |
8 "https://www.googleapis.com/auth/cloud-platform": { | 8 "https://www.googleapis.com/auth/cloud-platform": { |
9 "description": "View and manage your data across Google Clou
d Platform services" | 9 "description": "View and manage your data across Google Clou
d Platform services" |
10 }, | 10 }, |
11 "https://www.googleapis.com/auth/devstorage.read_write": { | 11 "https://www.googleapis.com/auth/devstorage.read_write": { |
12 "description": "Manage your data in Google Cloud Storage" | 12 "description": "Manage your data in Google Cloud Storage" |
13 }, | 13 }, |
14 "https://www.googleapis.com/auth/genomics": { | 14 "https://www.googleapis.com/auth/genomics": { |
15 "description": "View and manage Genomics data" | 15 "description": "View and manage Genomics data" |
16 }, | 16 }, |
17 "https://www.googleapis.com/auth/genomics.readonly": { | 17 "https://www.googleapis.com/auth/genomics.readonly": { |
18 "description": "View Genomics data" | 18 "description": "View Genomics data" |
19 } | 19 } |
20 } | 20 } |
21 } | 21 } |
22 }, | 22 }, |
23 "basePath": "/genomics/v1beta2/", | 23 "basePath": "/genomics/v1beta2/", |
24 "baseUrl": "https://www.googleapis.com/genomics/v1beta2/", | 24 "baseUrl": "https://www.googleapis.com/genomics/v1beta2/", |
25 "batchPath": "batch", | 25 "batchPath": "batch", |
26 "description": "Provides access to Genomics data.", | 26 "description": "Provides access to Genomics data.", |
27 "discoveryVersion": "v1", | 27 "discoveryVersion": "v1", |
28 "documentationLink": "https://developers.google.com/genomics/v1beta2/referen
ce", | 28 "documentationLink": "https://developers.google.com/genomics/v1beta2/referen
ce", |
29 "etag": "\"ye6orv2F-1npMW3u9suM3a7C5Bo/L5gWy_lZXMugcIAlIyqi-lI9384\"", | 29 "etag": "\"ye6orv2F-1npMW3u9suM3a7C5Bo/r3Yw5MfzaLpocptE3LE-pmOG6uY\"", |
30 "icons": { | 30 "icons": { |
31 "x16": "http://www.google.com/images/icons/product/search-16.gif", | 31 "x16": "http://www.google.com/images/icons/product/search-16.gif", |
32 "x32": "http://www.google.com/images/icons/product/search-32.gif" | 32 "x32": "http://www.google.com/images/icons/product/search-32.gif" |
33 }, | 33 }, |
34 "id": "genomics:v1beta2", | 34 "id": "genomics:v1beta2", |
35 "kind": "discovery#restDescription", | 35 "kind": "discovery#restDescription", |
36 "name": "genomics", | 36 "name": "genomics", |
37 "ownerDomain": "google.com", | 37 "ownerDomain": "google.com", |
38 "ownerName": "Google", | 38 "ownerName": "Google", |
39 "parameters": { | 39 "parameters": { |
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830 "type": "string" | 830 "type": "string" |
831 } | 831 } |
832 }, | 832 }, |
833 "path": "readgroupsets/{readGroupSetId}", | 833 "path": "readgroupsets/{readGroupSetId}", |
834 "scopes": [ | 834 "scopes": [ |
835 "https://www.googleapis.com/auth/cloud-platform", | 835 "https://www.googleapis.com/auth/cloud-platform", |
836 "https://www.googleapis.com/auth/genomics" | 836 "https://www.googleapis.com/auth/genomics" |
837 ] | 837 ] |
838 }, | 838 }, |
839 "export": { | 839 "export": { |
840 "description": "Exports read group sets to a BAM file in Goo
gle Cloud Storage.\n\nNote that currently there may be some differences between
exported BAM files and the original BAM file at the time of import. In particula
r, comments in the input file header will not be preserved, some custom tags wil
l be converted to strings, and original reference sequence order is not necessar
ily preserved.", | 840 "description": "Exports read group sets to a BAM file in Goo
gle Cloud Storage.\n\nNote that currently there may be some differences between
exported BAM files and the original BAM file at the time of import. See ImportRe
adGroupSets for details.", |
841 "httpMethod": "POST", | 841 "httpMethod": "POST", |
842 "id": "genomics.readgroupsets.export", | 842 "id": "genomics.readgroupsets.export", |
843 "path": "readgroupsets/export", | 843 "path": "readgroupsets/export", |
844 "request": { | 844 "request": { |
845 "$ref": "ExportReadGroupSetsRequest" | 845 "$ref": "ExportReadGroupSetsRequest" |
846 }, | 846 }, |
847 "response": { | 847 "response": { |
848 "$ref": "ExportReadGroupSetsResponse" | 848 "$ref": "ExportReadGroupSetsResponse" |
849 }, | 849 }, |
850 "scopes": [ | 850 "scopes": [ |
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872 "response": { | 872 "response": { |
873 "$ref": "ReadGroupSet" | 873 "$ref": "ReadGroupSet" |
874 }, | 874 }, |
875 "scopes": [ | 875 "scopes": [ |
876 "https://www.googleapis.com/auth/cloud-platform", | 876 "https://www.googleapis.com/auth/cloud-platform", |
877 "https://www.googleapis.com/auth/genomics", | 877 "https://www.googleapis.com/auth/genomics", |
878 "https://www.googleapis.com/auth/genomics.readonly" | 878 "https://www.googleapis.com/auth/genomics.readonly" |
879 ] | 879 ] |
880 }, | 880 }, |
881 "import": { | 881 "import": { |
882 "description": "Creates read group sets by asynchronously im
porting the provided information.\n\nNote that currently comments in the input f
ile header are not imported and some custom tags will be converted to strings, r
ather than preserving tag types. The caller must have WRITE permissions to the d
ataset.", | 882 "description": "Creates read group sets by asynchronously im
porting the provided information. The caller must have WRITE permissions to the
dataset.\n\nNotes on BAM import: \n- Tags will be converted to strings - tag ty
pes are not preserved\n- Comments (@CO) in the input file header are not importe
d\n- Original order of reference headers is not preserved\n- Any reverse strande
d unmapped reads will be reverse complemented, and their qualities (and \"BQ\" t
ag, if any) will be reversed\n- Unmapped reads will be stripped of positional in
formation (referenceName and position)", |
883 "httpMethod": "POST", | 883 "httpMethod": "POST", |
884 "id": "genomics.readgroupsets.import", | 884 "id": "genomics.readgroupsets.import", |
885 "path": "readgroupsets/import", | 885 "path": "readgroupsets/import", |
886 "request": { | 886 "request": { |
887 "$ref": "ImportReadGroupSetsRequest" | 887 "$ref": "ImportReadGroupSetsRequest" |
888 }, | 888 }, |
889 "response": { | 889 "response": { |
890 "$ref": "ImportReadGroupSetsResponse" | 890 "$ref": "ImportReadGroupSetsResponse" |
891 }, | 891 }, |
892 "scopes": [ | 892 "scopes": [ |
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1306 "scopes": [ | 1306 "scopes": [ |
1307 "https://www.googleapis.com/auth/cloud-platform", | 1307 "https://www.googleapis.com/auth/cloud-platform", |
1308 "https://www.googleapis.com/auth/genomics" | 1308 "https://www.googleapis.com/auth/genomics" |
1309 ] | 1309 ] |
1310 } | 1310 } |
1311 } | 1311 } |
1312 }, | 1312 }, |
1313 "variantsets": { | 1313 "variantsets": { |
1314 "methods": { | 1314 "methods": { |
1315 "create": { | 1315 "create": { |
1316 "description": "Creates a new variant set (only necessary in
v1).", | 1316 "description": "Creates a new variant set (only necessary in
v1).\n\nThe provided variant set must have a valid datasetId set - all other fi
elds are optional. Note that the id field will be ignored, as this is assigned b
y the server.", |
1317 "httpMethod": "POST", | 1317 "httpMethod": "POST", |
1318 "id": "genomics.variantsets.create", | 1318 "id": "genomics.variantsets.create", |
1319 "path": "variantsets", | 1319 "path": "variantsets", |
1320 "request": { | 1320 "request": { |
1321 "$ref": "VariantSet" | 1321 "$ref": "VariantSet" |
1322 }, | 1322 }, |
1323 "response": { | 1323 "response": { |
1324 "$ref": "VariantSet" | 1324 "$ref": "VariantSet" |
1325 } | 1325 } |
1326 }, | 1326 }, |
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1517 "$ref": "VariantSet" | 1517 "$ref": "VariantSet" |
1518 }, | 1518 }, |
1519 "scopes": [ | 1519 "scopes": [ |
1520 "https://www.googleapis.com/auth/cloud-platform", | 1520 "https://www.googleapis.com/auth/cloud-platform", |
1521 "https://www.googleapis.com/auth/genomics" | 1521 "https://www.googleapis.com/auth/genomics" |
1522 ] | 1522 ] |
1523 } | 1523 } |
1524 } | 1524 } |
1525 } | 1525 } |
1526 }, | 1526 }, |
1527 "revision": "20150729", | 1527 "revision": "20150812", |
1528 "rootUrl": "https://www.googleapis.com/", | 1528 "rootUrl": "https://www.googleapis.com/", |
1529 "schemas": { | 1529 "schemas": { |
1530 "AlignReadGroupSetsRequest": { | 1530 "AlignReadGroupSetsRequest": { |
1531 "description": "The read group set align request.", | 1531 "description": "The read group set align request.", |
1532 "id": "AlignReadGroupSetsRequest", | 1532 "id": "AlignReadGroupSetsRequest", |
1533 "properties": { | 1533 "properties": { |
1534 "bamSourceUris": { | 1534 "bamSourceUris": { |
1535 "description": "The BAM source files for alignment. Exactly
one of readGroupSetId, bamSourceUris, interleavedFastqSource or pairedFastqSourc
e must be provided. The caller must have READ permissions for these files.", | 1535 "description": "The BAM source files for alignment. Exactly
one of readGroupSetId, bamSourceUris, interleavedFastqSource or pairedFastqSourc
e must be provided. The caller must have READ permissions for these files.", |
1536 "items": { | 1536 "items": { |
1537 "type": "string" | 1537 "type": "string" |
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3850 "type": "array" | 3850 "type": "array" |
3851 } | 3851 } |
3852 }, | 3852 }, |
3853 "type": "object" | 3853 "type": "object" |
3854 } | 3854 } |
3855 }, | 3855 }, |
3856 "servicePath": "genomics/v1beta2/", | 3856 "servicePath": "genomics/v1beta2/", |
3857 "title": "Genomics API", | 3857 "title": "Genomics API", |
3858 "version": "v1beta2" | 3858 "version": "v1beta2" |
3859 } | 3859 } |
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