Have jni_generator.gypi specify include_dirs to dependent targets.

ui/ui.gyp

 # Copyright (c) 2012 The Chromium Authors. All rights reserved.
 # Use of this source code is governed by a BSD-style license that can be
 # found in the LICENSE file.
 
 {
   'variables': {
     'chromium_code': 1,
   },
   'targets': [
     {
@@ skipping 552 matching lines @@
             'base/models/button_menu_item_model.cc',
             'base/models/dialog_model.cc',
             'base/theme_provider.cc',
             'base/touch/touch_device.cc',
             'base/touch/touch_editing_controller.cc',
             'base/ui_base_types.cc',
           ],
           'dependencies': [
             'ui_base_jni_headers',
           ],
-          'include_dirs': [
-            '<(SHARED_INTERMEDIATE_DIR)/ui',
-          ],
           'link_settings': {
             'libraries': [
               '-ljnigraphics',
             ],
           },
         }],
         ['OS=="android" and android_webview_build==0', {
           'dependencies': [
             'android/ui_android.gyp:ui_java',
           ],
@@ skipping 25 matching lines @@
         ]
       }
     },
   ],
   'conditions': [
     ['OS=="android"' , {
        'targets': [
          {
            'target_name': 'ui_base_jni_headers',
            'type': 'none',
-           'direct_dependent_settings': {
-             'include_dirs': [
-               '<(SHARED_INTERMEDIATE_DIR)/ui',
-             ],
-           },
            'sources': [
              'android/java/src/org/chromium/ui/base/Clipboard.java',
              'android/java/src/org/chromium/ui/base/LocalizationUtils.java',
              'android/java/src/org/chromium/ui/base/SelectFileDialog.java',
              'android/java/src/org/chromium/ui/base/ViewAndroid.java',
              'android/java/src/org/chromium/ui/base/WindowAndroid.java',
            ],
            'variables': {
              'jni_gen_package': 'ui',
              'jni_generator_ptr_type': 'long',
@@ skipping 55 matching lines @@
               'xcode_settings': {
                 'GCC_SYMBOLS_PRIVATE_EXTERN': 'NO',
               },
             }],
           ],
         },
       ],
     }],
   ],
 }