Roll of googleapis as of 4/7/2015.

discovery/googleapis_beta/genomics__v1beta2.json

Index: discovery/googleapis_beta/genomics__v1beta2.json
diff --git a/discovery/googleapis_beta/genomics__v1beta2.json b/discovery/googleapis_beta/genomics__v1beta2.json
index 0fdfcf915105f4447bb0ed9015595c4c5b74ce3a..a8d038b1b44bd65b69f24bdfdd7cd2c36329b1a8 100644
--- a/discovery/googleapis_beta/genomics__v1beta2.json
+++ b/discovery/googleapis_beta/genomics__v1beta2.json
@@ -23,7 +23,7 @@
     "description": "Provides access to Genomics data.",
     "discoveryVersion": "v1",
     "documentationLink": "https://developers.google.com/genomics/v1beta2/reference",
-    "etag": "\"ye6orv2F-1npMW3u9suM3a7C5Bo/wfhG0otVobUDwlejJM3hCJTIZzM\"",
+    "etag": "\"ye6orv2F-1npMW3u9suM3a7C5Bo/zxM6l4gLCm-vFIvi5lr-kFXGmmI\"",
     "icons": {
         "x16": "http://www.google.com/images/icons/product/search-16.gif",
         "x32": "http://www.google.com/images/icons/product/search-32.gif"
@@ -168,7 +168,7 @@
                     ]
                 },
                 "search": {
-                    "description": "Searches for annotation sets which match the given criteria. Results are returned in a deterministic order. Caller must have READ permission for the queried datasets.",
+                    "description": "Searches for annotation sets that match the given criteria. Results are returned in a deterministic order. Caller must have READ permission for the queried datasets.",
                     "httpMethod": "POST",
                     "id": "genomics.annotationSets.search",
                     "path": "annotationSets/search",
@@ -314,7 +314,7 @@
                     ]
                 },
                 "search": {
-                    "description": "Searches for annotations which match the given criteria. Results are returned ordered by start position. Annotations which have matching start positions are ordered deterministically. Caller must have READ permission for the queried annotation sets.",
+                    "description": "Searches for annotations that match the given criteria. Results are returned ordered by start position. Annotations that have matching start positions are ordered deterministically. Caller must have READ permission for the queried annotation sets.",
                     "httpMethod": "POST",
                     "id": "genomics.annotations.search",
                     "path": "annotations/search",
@@ -550,13 +550,12 @@
                     ]
                 },
                 "list": {
-                    "description": "Lists all datasets.",
+                    "description": "Lists datasets within a project.",
                     "httpMethod": "GET",
                     "id": "genomics.datasets.list",
                     "parameters": {
                         "pageSize": {
-                            "default": "50",
-                            "description": "The maximum number of results returned by this request.",
+                            "description": "The maximum number of results returned by this request. If unspecified, defaults to 50.",
                             "format": "int32",
                             "location": "query",
                             "type": "integer"
@@ -567,7 +566,7 @@
                             "type": "string"
                         },
                         "projectNumber": {
-                            "description": "Only return datasets which belong to this Google Developers Console project. Only accepts project numbers. Returns all public projects if no project number is specified.",
+                            "description": "The project to list datasets for.",
                             "format": "int64",
                             "location": "query",
                             "type": "string"
@@ -938,7 +937,6 @@
                             ],
                             "parameters": {
                                 "pageSize": {
-                                    "default": "1024",
                                     "description": "The maximum number of results to return in a single page. If unspecified, defaults to 1024. The maximum value is 2048.",
                                     "format": "int32",
                                     "location": "query",
@@ -1073,7 +1071,6 @@
                                     "type": "string"
                                 },
                                 "pageSize": {
-                                    "default": "200000",
                                     "description": "Specifies the maximum number of bases to return in a single page.",
                                     "format": "int32",
                                     "location": "query",
@@ -1154,6 +1151,22 @@
                 }
             }
         },
+        "streamingVariantStore": {
+            "methods": {
+                "streamvariants": {
+                    "description": "Returns a stream of all the variants matching the search request, ordered by reference name, position, and ID.",
+                    "httpMethod": "POST",
+                    "id": "genomics.streamingVariantStore.streamvariants",
+                    "path": "streamingVariantStore/streamvariants",
+                    "request": {
+                        "$ref": "StreamVariantsRequest"
+                    },
+                    "response": {
+                        "$ref": "Variant"
+                    }
+                }
+            }
+        },
         "variants": {
             "methods": {
                 "create": {
@@ -1453,7 +1466,7 @@
             }
         }
     },
-    "revision": "20150223",
+    "revision": "20150326",
     "rootUrl": "https://www.googleapis.com/",
     "schemas": {
         "AlignReadGroupSetsRequest": {
@@ -1498,7 +1511,7 @@
             "type": "object"
         },
         "Annotation": {
-            "description": "An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. A variant annotation is represented by one or more of these canonical types. An annotation is not inherently associated with a specific sample/individual (though a client could choose to use annotations in this way). Example canonical annotation types are 'Gene' and 'Variant'.",
+            "description": "An annotation describes a region of reference genome. The value of an annotation may be one of several canonical types, supplemented by arbitrary info tags. A variant annotation is represented by one or more of these canonical types. An annotation is not inherently associated with a specific sample or individual (though a client could choose to use annotations in this way). Example canonical annotation types are 'Gene' and 'Variant'.",
             "id": "Annotation",
             "properties": {
                 "annotationSetId": {
@@ -1530,7 +1543,7 @@
                 },
                 "transcript": {
                     "$ref": "Transcript",
-                    "description": "A transcript value represents the assertion that a particular region of the reference genome may be transcribed as RNA. An alternate splicing pattern would be represented as separate transcript object. This field is only set for annotations of type TRANSCRIPT."
+                    "description": "A transcript value represents the assertion that a particular region of the reference genome may be transcribed as RNA. An alternative splicing pattern would be represented as a separate transcript object. This field is only set for annotations of type TRANSCRIPT."
                 },
                 "type": {
                     "description": "The data type for this annotation. Must match the containing annotation set's type.",
@@ -1550,13 +1563,13 @@
                 },
                 "variant": {
                     "$ref": "VariantAnnotation",
-                    "description": "A variant annotation which describes the effect of a variant on the genome, the coding sequence, and/or higher level consequences at the organism level e.g. pathogenicity. This field is only set for annotations of type VARIANT."
+                    "description": "A variant annotation, which describes the effect of a variant on the genome, the coding sequence, and/or higher level consequences at the organism level e.g. pathogenicity. This field is only set for annotations of type VARIANT."
                 }
             },
             "type": "object"
         },
         "AnnotationSet": {
-            "description": "An annotation set is a logical grouping of annotations which share consistent type information and provenance. An example would be 'all genes from refseq', or 'all variant annotations from ClinVar'.",
+            "description": "An annotation set is a logical grouping of annotations that share consistent type information and provenance. Examples of annotation sets include 'all genes from refseq', and 'all variant annotations from ClinVar'.",
             "id": "AnnotationSet",
             "properties": {
                 "datasetId": {
@@ -1583,7 +1596,7 @@
                     "type": "string"
                 },
                 "referenceSetId": {
-                    "description": "The ID of the reference set which defines the coordinate-space for this set's annotations.",
+                    "description": "The ID of the reference set that defines the coordinate space for this set's annotations.",
                     "type": "string"
                 },
                 "sourceUri": {
@@ -1921,7 +1934,7 @@
             "id": "ExportReadGroupSetsRequest",
             "properties": {
                 "exportUri": {
-                    "description": "A Google Cloud Storage URI where the exported BAM file will be created. The currently authenticated user must have write access to the new file location. An error will be returned if the URI already contains data.",
+                    "description": "A Google Cloud Storage URI for the exported BAM file. The currently authenticated user must have write access to the new file. An error will be returned if the URI already contains data.",
                     "type": "string"
                 },
                 "projectNumber": {
@@ -2853,7 +2866,7 @@
                     "type": "string"
                 },
                 "description": {
-                    "description": "Optional free text description of this reference set.",
+                    "description": "Free text description of this reference set.",
                     "type": "string"
                 },
                 "id": {
@@ -2918,7 +2931,7 @@
                     "type": "string"
                 },
                 "types": {
-                    "description": "If specified, only annotation sets which have any of these types are returned.",
+                    "description": "If specified, only annotation sets that have any of these types are returned.",
                     "items": {
                         "enum": [
                             "GENE",
@@ -2977,7 +2990,7 @@
                 },
                 "range": {
                     "$ref": "QueryRange",
-                    "description": "If specified, this query matches only annotations which overlap this range."
+                    "description": "If specified, this query matches only annotations that overlap this range."
                 }
             },
             "type": "object"
@@ -3134,7 +3147,7 @@
                     "type": "string"
                 },
                 "pageSize": {
-                    "description": "Specifies number of results to return in a single page. If unspecified, it will default to 128. The maximum value is 1024.",
+                    "description": "Specifies number of results to return in a single page. If unspecified, it will default to 256. The maximum value is 1024.",
                     "format": "int32",
                     "type": "integer"
                 },
@@ -3439,6 +3452,41 @@
             },
             "type": "object"
         },
+        "StreamVariantsRequest": {
+            "description": "The stream variants request.",
+            "id": "StreamVariantsRequest",
+            "properties": {
+                "callSetIds": {
+                    "description": "Only return variant calls which belong to call sets with these ids. Leaving this blank returns all variant calls.",
+                    "items": {
+                        "type": "string"
+                    },
+                    "type": "array"
+                },
+                "end": {
+                    "description": "The end of the window (0-based, exclusive) for which overlapping variants should be returned.",
+                    "format": "int64",
+                    "type": "string"
+                },
+                "referenceName": {
+                    "description": "Required. Only return variants in this reference sequence.",
+                    "type": "string"
+                },
+                "start": {
+                    "description": "The beginning of the window (0-based, inclusive) for which overlapping variants should be returned.",
+                    "format": "int64",
+                    "type": "string"
+                },
+                "variantSetIds": {
+                    "description": "Exactly one variant set ID must be provided. Only variants from this variant set will be returned.",
+                    "items": {
+                        "type": "string"
+                    },
+                    "type": "array"
+                }
+            },
+            "type": "object"
+        },
         "Transcript": {
             "description": "A transcript represents the assertion that a particular region of the reference genome may be transcribed as RNA.",
             "id": "Transcript",
@@ -3448,7 +3496,7 @@
                     "description": "The range of the coding sequence for this transcript, if any. To determine the exact ranges of coding sequence, intersect this range with those of the exons, if any. If there are any exons, the codingSequence must start and end within them.\n\nNote that in some cases, the reference genome will not exactly match the observed mRNA transcript e.g. due to variance in the source genome from reference. In these cases, exon.frame will not necessarily match the expected reference reading frame and coding exon reference bases cannot necessarily be concatenated to produce the original transcript mRNA."
                 },
                 "exons": {
-                    "description": "The exons which compose this transcript. Exons are the pieces of the transcript which are spliced together, may be exported from a cell's nucleus, and may then be translated to protein. This field should be unset for genomes where transcript splicing does not occur, for example prokaryotes.\n\n\nIntrons are regions of the transcript which are not included in the spliced RNA product. Though not explicitly modeled here, intron ranges can be deduced; all regions of this transcript which are not exons are introns.\n\n\nExonic sequences do not necessarily code for a translational product (amino acids). Only the regions of exons bounded by the codingSequence correspond to coding DNA sequence.\n\n\nExons are ordered by start position and may not overlap.",
+                    "description": "The exons that compose this transcript. This field should be unset for genomes where transcript splicing does not occur, for example prokaryotes.\n\n\nIntrons are regions of the transcript that are not included in the spliced RNA product. Though not explicitly modeled here, intron ranges can be deduced; all regions of this transcript that are not exons are introns.\n\n\nExonic sequences do not necessarily code for a translational product (amino acids). Only the regions of exons bounded by the codingSequence correspond to coding DNA sequence.\n\n\nExons are ordered by start position and may not overlap.",
                     "items": {
                         "$ref": "TranscriptExon"
                     },
@@ -3487,7 +3535,7 @@
                 },
                 "frame": {
                     "$ref": "Int32Value",
-                    "description": "The frame of this exon. Contains a value of 0, 1, or 2 which indicates the offset of the first coding base of the exon within the reading frame of the coding DNA sequence, if any. This field is dependent on the strandedness of this annotation (see Annotation.position.reverseStrand). For forward stranded annotations, this offset is relative to the exon.start. For reverse strand annotations, this offset is relative to the exon.end-1.\n\nUnset if this exon does not intersect the coding sequence. Upon creation of a transcript, the frame must be populated for all or none of the coding exons."
+                    "description": "The frame of this exon. Contains a value of 0, 1, or 2, which indicates the offset of the first coding base of the exon within the reading frame of the coding DNA sequence, if any. This field is dependent on the strandedness of this annotation (see Annotation.position.reverseStrand). For forward stranded annotations, this offset is relative to the exon.start. For reverse strand annotations, this offset is relative to the exon.end-1.\n\nUnset if this exon does not intersect the coding sequence. Upon creation of a transcript, the frame must be populated for all or none of the coding exons."
                 },
                 "start": {
                     "description": "The start position of the exon on this annotation's reference sequence, 0-based inclusive. Note that this is relative to the reference start, and not the containing annotation start.",
@@ -3661,7 +3709,7 @@
                     "type": "string"
                 },
                 "transcriptIds": {
-                    "description": "Google annotation ID of the transcripts affected by this variant. These should be provided when the variant is created.",
+                    "description": "Google annotation IDs of the transcripts affected by this variant. These should be provided when the variant is created.",
                     "items": {
                         "type": "string"
                     },
@@ -3703,7 +3751,7 @@
                     "type": "string"
                 },
                 "externalIds": {
-                    "description": "The set of external ids for this condition.",
+                    "description": "The set of external IDs for this condition.",
                     "items": {
                         "$ref": "ExternalId"
                     },